Barley1 22k Microarray Sequence ID: Barley1_00069 |
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Sequence Type
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Exemplar sequence
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Probe Set Details
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Probe Sequences & Alignment
- Probe sets for Barley1_00069:
Expression details for Contig69_x_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Contig69_x_at
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Alignments and Assemblies
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• Barley1 GeneChip Assembly
• Barley1 GeneChip Assembly 25 contig and alignment
• PlantGDB PUT assemblies
• GrainGenes Blast
• HarvEST: Barley 21 Assembly
• HarvEST: Barley 25 Assembly
• HarvEST BLAST
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): No hits
• Brachypodium distachyon Alignment at Brachybase: No hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
BEST BLASTX NR: 10/13/02 T04474 9e-39 B1 hordein - barley emb|CAA60681.1| (X87232) B1 hordein [Hordeum vulgare]
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Annotation via Blast
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• BLASTX UniProt: UniRef90_P06470, B1-hordein n=1 Tax=Hordeum vulgare RepID=HOR1_HORVU, Expect:1e-29, match=79/156. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA29477_4513, B hordein [Hordeum vulgare var. distichum (Two-rowed barley)], Expect:0, match=747/747. Blast executed on 2007-10-23 against TIGR TA Hordeum vulgare release 2 show top hits
• BLASTX NCBI Reference Sequence: No hits
• BLASTX MSU Rice genome: No hits
• BLASTN DFCI Hordeum vulgare Gene Index: TC233286, homologue to UniRef100_Q40021 Cluster: B1 hordein; n=1; Hordeum vulgare|Rep: B1 hordein - Hordeum vulgare (Barley), partial (87%), Expect:0, match=949/748. Blast executed on 2010-11-03 against HvGI(DFCI) release 11 show top hits
• BLASTX Brachypodium distachyon genome: No hits
• BLASTX Arabidopsis thaliana genome: No hits
Barley1 exemplars are kindly provided by Dr. Timothy Close from HarvEST:Barley. The BLASTs in this section are based on contig assembly #25.
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Additional Annotations
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No additional annotations found for this probe set.
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Sequence
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Total length: 963
>Barley1_00069
TTTGCACTCCTTGCCATTGCGGCAACAAGTACCATTGCACAACAACAACCATTTCCACAA
AAACCCATCCCACAACAACCACAACCATATCCACAACAACCCTTCCCACCGCAACAACCA
TTTCCACAACAACCACCATTTTGGCAACAACAACCATTTCCACAACAACCACCATTTGGG
CTACAACAACCAATTCTATTGCAGCAACAACCATGTACACCACAACAAACACCACTCCCA
CAAGGACAACTGTACCAAATGCTTATGCAACTACAAATACCCTATGTTCATCCATCTATT
TTGCAACAGCTAAACCCATGCAAGGTATTCCTCCAGCAGCAATGCAGCCGCGTGCGAATG
CCACAAATTATTGCTAGGTCACAAATGTTGCAGCAGAGCAGTTGCCATGTGTTGCAGCAA
CAATGTTGCCAGCAACTGCCGCAAATTCCCGAACAATTCCTCCATGAGGCAATCCGTGCA
ATCGTCTACTCTATCTTTTTGCAAGAACAACCCCAACAGTCGGTCCAAGGTGTCTCCCAA
CCCCAACAACAATTGCAGCAGGAGCAAGTCGGACAATGTTCTTTCCAACAACCTCAACCA
CAACAACTTGGTCAACCACAACAGGTACCACAGAGTGTTTTCTTGCAGCCACACCAGATA
GCTCAGCTTGAGGCGACGACTTCCATTGCGCTGCGTACCCTACCAACGATGTGCAATGTT
AATGTGCCGTTATTCGACATCATGCCATTCGGCGTTGGCACCGGAGTTGGCGTCTAATGA
TAAGAAAAGGTCTCGAGAAATATATAGTTGGATCACCGTTGTTTAATCGATATATATGTC
GATGTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCGGCCCAAACTTGTT
GTTTAAATTCTGGAATAAATATAAATAAAGTTTTATCTAAACAATATTCAAAAAAAAAAA
AAA
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