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expression data publicly available to researchers world-wide...
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Wheat 61k Microarray Sequence ID: Ta.9998.1.S1_at |
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Sequence Type
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Consensus sequence
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Probe Set Details
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Probe Sequences & Alignment
EXPRESSION DETAILS for Ta.9998.1.S1_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Ta.9998.1.S1_at
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Alignments and Assemblies
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• PlantGDB PUT assemblies
• GrainGenes Blast
• PLEXdb Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): LOC_Os04g45470.1, vacuolar-processing enzyme precursor, putative, expressed, Expect:0, match=249/364. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• Brachypodium distachyon Alignment at Brachybase: Bradi5g16960.1, , Expect:0, match=265/371. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
gb:CD932107 /DB_XREF=gi:32779871 /DB_XREF=GR45.116O09F010424 /CLONE=GR45116O09 /TID=Ta.9998.1 /CNT=66 /FEA=EST /TIER=ConsEnd /STK=0 /UG=Ta.9998 /UG_TITLE=Transcribed sequence with weak similarity to protein pir:S60050 (A.thaliana) S60050 vacuolar processing enzyme
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Annotation via Blast
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• BLASTX UniProt: UniRef90_P49045, Vacuolar-processing enzyme n=1 Tax=Glycine max RepID=VPE_SOYBN, Expect:1e-159, match=210/360. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA65792_4565, C13 endopeptidase NP1 [Hordeum vulgare (Barley)], Expect:0, match=1733/1737. Blast executed on 2007-10-23 against Triticum aestivum release 2 show top hits
• BLASTX NCBI Reference Sequence: XP_002448237, hypothetical protein SORBIDRAFT_06g023820 [Sorghum bicolor], Expect:0, match=253/364. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTX MSU Rice genome: LOC_Os04g45470.1, vacuolar-processing enzyme precursor, putative, expressed, Expect:0, match=249/364. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• BLASTN DFCI Wheat Gene Index: TC381845, UniRef100_A7L845 Cluster: VPE1; n=1; Triticum aestivum|Rep: VPE1 - Triticum aestivum (Wheat), complete, Expect:0, match=1745/1699. Blast executed on 2010-11-03 against TaGI(DFCI) release 12 show top hits
• BLASTX Brachypodium distachyon genome: Bradi5g16960.1, , Expect:0, match=265/371. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
• BLASTX Arabidopsis thaliana genome: AT1G62710.1, | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=487, Expect:1e-128, match=229/362. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
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Sequence
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Total length: 1782
>Ta.9998.1.S1_at gb|CD932107;
tcgannnngcncnnngcntncncnnccnnncnaggctctagcacacgcacatgatgaact
cgagggtggcgatggctgcgtggtgggtttgtggactcctcccgctcctggcggatgcgg
ccaaggggaactcggagccgctgatccggctgccgacggagaatgggcatgcccctgccc
ctgcgcctggccctgccgcgtcggcggcgggtgaagaggtgacgaagtgggccgtgctcg
ttgccggctcctccggctacgagaactaccggcaccaggccgatgtgtgccacgcgtacc
agatcctgaagaagggggggctaaaggatgagaacattgtggtgtttatgtacgatgaca
tcgccaacagccccgacaacccaaggcgtggaaccgtcatcaaccatcccaaaggcaaag
atgtttaccatggtgttcccaaggactacactggtgaccaggtcactgctaagaactttt
atgcggttctcctggggaacaaaaccgcggttaccggagggagtaggaaggtgataaaca
gcaaaccagaggatcacatcttcatcttctactcggatcatgggtctcctggttcacttg
gtatgcccaacgggccagatgtttatgctgacgacttcatcaaagtgttacggcaaaagc
atgcttccaaaagctattcgaaaatggtcatatatgttgaagcgtgtgaaagtggcagca
tctttgagggtttgatgccacaagatnacaatatttatgttacagcggcatcaaatgcgg
tagaaagtagctgggcagcatactgccctgatgatggaacgccacctcctcctgaatatt
ttacctgtttaggtgacttatacagtgtttcttggatggaagacagtgaaactcaaaatc
taaagaacgaaaccatcaagcagcagtacgaggtggttaaagcgagaacggcaccccgaa
atgagtccattagaggttctcatgtcatggagtatggcgacaagactttcaaggaggaca
tgcttttcctctaccaaggtttcgatccggcgaagtcaagcatcagaaacaggccgctgc
ctatgcccagcctcaagggtgcaatcaagcaaagagatgccgatattctcttcatgtgga
angaagtatgggaagttgaatgggggatcagaagagaagcagagggccctcagggaggtc
aaagaaaccgtgctgcacaggaagcatctggacagcagtatcgatttcatcgggaagctt
gtctttgggttcgacaaggggcctttggtgctcgaggctgctagaggctctggccagcca
ttggtcgacgattgggattgtctgaagacgatggtgcgagtgttcgagtcccagtgcgga
tcactcactcagtacggcatgaaacacacgagggcgttcgcaaacatgtgcaacaatggc
gtctccgaggccgagatgaaggaggcgagcatcagcgcttgcgacggctacgacatgggg
aggtggagcccgttggttcgaggctacagcgcctgatccgcttgcagtgcagtactacta
catggcagcagcagcagccagagctccggaggttcctagctagacctcgtatggtgtaca
tacacacattggtataccgtatacatacaagaaagaagaaaccgcccaacaatggcgccc
ctgtggtattgggttaatcagtagtgtatggtcgtgcctttgtaaatcgaatttgactgc
aatcaattgaaaggcaattattactatgtnnnnaanananaa
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