Barley1 22k Microarray Sequence ID: Barley1_U43284.CDS |
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Sequence Type
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Exemplar sequence
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Probe Set Details
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Probe Sequences & Alignment
- Probe sets for Barley1_U43284.CDS:
Expression details for 1289374_Reg_826-1545_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for 1289374_Reg_826-1545_at
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Alignments and Assemblies
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• Barley1 GeneChip Assembly
• Barley1 GeneChip Assembly 25 contig and alignment
• PlantGDB PUT assemblies
• GrainGenes Blast
• HarvEST: Barley 21 Assembly
• HarvEST: Barley 25 Assembly
• HarvEST BLAST
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): No hits
• Brachypodium distachyon Alignment at Brachybase: No hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
Cloning vector phGFP-S65T, complete sequence, green fluorescent protein (gfp) gene, complete cds
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Annotation via Blast
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• BLASTX UniProt: UniRef90_Q8WP95, Green fluorescent protein n=9 Tax=Aequoreidae RepID=Q8WP95_9CNID, Expect:1e-117, match=196/238. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: No hits
• BLASTX NCBI Reference Sequence: No hits
• BLASTX MSU Rice genome: No hits
• BLASTN DFCI Hordeum vulgare Gene Index: No hits
• BLASTX Brachypodium distachyon genome: No hits
• BLASTX Arabidopsis thaliana genome: No hits
Barley1 exemplars are kindly provided by Dr. Timothy Close from HarvEST:Barley. The BLASTs in this section are based on contig assembly #25.
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Additional Annotations
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2004-03-01 Roger Wise Lab
Cloning vector phGFP-S65T, complete sequence, green fluorescent protein (gfp) gene, complete cds [Cloning vector phGFP-S65T]
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Sequence
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Total length: 720
>Barley1_U43284.CDS
ATGGTGAGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGAC
GGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTAC
GGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACC
CTCGTGACCACCTTCACCTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAG
CAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTC
TTCAAGGACGACGGCAACTACAAGACCCGCGCCGAGGTGAAGTTCGAGGGCGACACCCTG
GTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCAC
AAGCTGGAGTACAACTACAACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAAC
GGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCC
GACCACTACCAGCAGAACACCCCCATCGGCGACGGCCCCGTGCTGCTGCCCGACAACCAC
TACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTC
CTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGACGAGCTGTACAAGTAA
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