Barley1 22k Microarray Sequence ID: Barley1_00151 |
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Sequence Type
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Exemplar sequence
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Probe Set Details
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Probe Sequences & Alignment
- Probe sets for Barley1_00151:
Expression details for Contig151_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Contig151_at
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Alignments and Assemblies
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• Barley1 GeneChip Assembly
• Barley1 GeneChip Assembly 25 contig and alignment
• PlantGDB PUT assemblies
• GrainGenes Blast
• HarvEST: Barley 21 Assembly
• HarvEST: Barley 25 Assembly
• HarvEST BLAST
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): No hits
• Brachypodium distachyon Alignment at Brachybase: No hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
BEST BLASTX NR:
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Annotation via Blast
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• BLASTX UniProt: No hits
• BLASTN TIGR Plant Transcript Assemblies: TA31605_4513, , Expect:0, match=721/721. Blast executed on 2007-10-23 against TIGR TA Hordeum vulgare release 2 show top hits
• BLASTX NCBI Reference Sequence: No hits
• BLASTX MSU Rice genome: No hits
• BLASTN DFCI Hordeum vulgare Gene Index: TC215011, , Expect:0, match=786/720. Blast executed on 2010-11-03 against HvGI(DFCI) release 11 show top hits
• BLASTX Brachypodium distachyon genome: No hits
• BLASTX Arabidopsis thaliana genome: No hits
Barley1 exemplars are kindly provided by Dr. Timothy Close from HarvEST:Barley. The BLASTs in this section are based on contig assembly #25.
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Additional Annotations
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No additional annotations found for this probe set.
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Sequence
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Total length: 738
>Barley1_00151
AGTTTTCAGATAGCATATCCTAACAGAACAGGTGATTGGTAAAAAACTAGGATAGCAAGA
GCAGTATGGCAACCGAGCTTAATCAATCTCCTGGAGCGAGGCGCCGGTGGCCGTGGCGCC
ACCAGCTGCGGCGGCGACGTCCTCGGCGGTGAACTTGCCCTTGGCCTTGTCAGCAGCGCG
GCCACGAGCCTTGCGGTCGAGGAGGGCCTTGCGGTCCCATCCATCCATGAGATCATCGAT
CTCCATGGACAAGCACAAGAGTCACACCCGTGCACTAGCCTTGCTGCTCTCCCTGCTGCT
TCTCGCCTGTTTTCCCCTTCATGCGCACTGCGGCATCATGGAGGGAATGGAGGAAGACAA
GATCAATTTACCGGGCGGGCTCTGCGTCCATCATAAAGACTGCAAACCGGGTAATTGTTG
CTACTGGTGTCTAGTGCTGGATCTGTGCTATGCATCAGAGGCCGAGTGCAATCGAGAGTG
CAAAAGCCACATCGATGCGCGCCTGCAGTTTAACCTTCCATCGCCTTCAAATTAAGTTCC
TCCATTTTGAATCGGCAACCCAATGGAACAAGACTAGTATTTCAATTTGTTGTATTCCCT
CAAAGTCGCCGGAGGTAGTTGTTACAATAAAAATATGGTGCAACGTTTTTGTAGCAATTG
TGTATTTATTTTTCAATGTCTTATTAGGGAACATTTCTAATTATCAACCTTTTTATGGTT
TAAAAAAAAAAAAAAAAA
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