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Barley1 22k Microarray Sequence ID: Barley1_00086 |
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Sequence Type
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Exemplar sequence
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Probe Set Details
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Probe Sequences & Alignment
- Probe sets for Barley1_00086:
Expression details for Contig86_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Contig86_at
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Alignments and Assemblies
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• Barley1 GeneChip Assembly
• Barley1 GeneChip Assembly 25 contig and alignment
• PlantGDB PUT assemblies
• GrainGenes Blast
• HarvEST: Barley 21 Assembly
• HarvEST: Barley 25 Assembly
• HarvEST BLAST
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): LOC_Os09g27030.2, oryzain gamma chain precursor, putative, expressed, Expect:1e-165, match=280/328. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• Brachypodium distachyon Alignment at Brachybase: Bradi4g31440.2, , Expect:1e-169, match=286/328. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
BEST BLASTX NR: 01/29/03 P05167 e-129 Thiol protease aleurain precursor emb|CAA28804.1| aleurain [Hordeum vulgare]
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Annotation via Blast
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• BLASTX UniProt: UniRef90_P05167, Thiol protease aleurain n=5 Tax=Pooideae RepID=ALEU_HORVU, Expect:0, match=317/328. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA28732_4513, Thiol protease aleurain precursor [Hordeum vulgare (Barley)], Expect:0, match=1217/1217. Blast executed on 2007-10-23 against TIGR TA Hordeum vulgare release 2 show top hits
• BLASTX NCBI Reference Sequence: NP_001063289, Os09g0442300 [Oryza sativa Japonica Group], Expect:1e-164, match=280/328. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTX MSU Rice genome: LOC_Os09g27030.2, oryzain gamma chain precursor, putative, expressed, Expect:1e-165, match=280/328. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• BLASTN DFCI Hordeum vulgare Gene Index: TC204919, UniRef100_P05167 Cluster: Thiol protease aleurain precursor; n=1; Hordeum vulgare|Rep: Thiol protease aleurain precursor - Hordeum vulgare (Barley), complete, Expect:0, match=1505/1091. Blast executed on 2010-11-03 against HvGI(DFCI) release 11 show top hits
• BLASTX Brachypodium distachyon genome: Bradi4g31440.2, , Expect:1e-169, match=286/328. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
• BLASTX Arabidopsis thaliana genome: AT5G60360.1, | Symbols: SAG2, AALP, ALP | aleurain-like protease | chr5:24280044-24282152 FORWARD LENGTH=359, Expect:1e-134, match=230/328. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
Barley1 exemplars are kindly provided by Dr. Timothy Close from HarvEST:Barley. The BLASTs in this section are based on contig assembly #25.
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Additional Annotations
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No additional annotations found for this probe set.
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Sequence
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Total length: 1572
>Barley1_00086
CGCCTACCCAACCCAGTAAAATACTGCCACCTATCCGCCGGCGAAACGAAATGGCCCACG
CCCGCGTCCTCCTCCTGGCGCTCGCCGTCCTGGCCACGGCCGCCGTCGCCGTCGCCTCCT
CCTCCTCCTTCGCCGACTCCAACCCGATCCGGCCCGTCACCGACCGCGCCGCCTCGACGC
TCGAGTCCGCCGTCCTCGGCGCGCTCGGCCGCACCCGCCACGCCCTCCGCTTCGCGCGCT
TCGCCGTCAGGTACGGCAAGAGCTACGAGAGCGCGGCGGAGGTGCGGAGGCGGTTCCGGA
TCTTCTCCGAGAGCCTCGAGGAGGTGCGCTCCACCAACCGGAAGGGCCTCCCCTACCGCC
TCGGCATCAACCGCTTCTCGGACATGAGCTGGGAGGAGTTCCAGGCGACCCGTCTCGGCG
CGGCGCAGACCTGCTCGGCGACGCTCGCCGGCAACCACCTCATGCGGGACGCCGCCGCGC
TCCCGGAGACCAAAGACTGGAGGGAGGATGGGATCGTCAGCCCCGTCAAAAACCAGGCCC
ATTGCGGCTCCTGCTGGACGTTCAGCACTACTGGCGCACTTGAGGCAGCATATACTCAGG
CCACTGGAAAGAACATCTCTCTTTCTGAGCAACAGCTGGTTGACTGTGCTGGTGGGTTCA
ATAACTTTGGATGCAACGGAGGCCTTCCATCCCAGGCGTTTGAGTACATCAAATACAATG
GCGGGATCGACACCGAGGAGTCCTACCCTTACAAGGGTGTCAATGGTGTCTGCCATTACA
AGGCTGAAAATGCTGCGGTTCAGGTTTTGGACTCAGTAAACATCACACTGAATGCCGAGG
ATGAACTGAAGAACGCCGTTGGGTTGGTTCGCCCAGTGAGTGTGGCCTTTCAGGTGATTG
ACGGTTTCAGGCAGTACAAGAGCGGAGTTTACACCAGCGACCATTGTGGCACTACCCCTG
ATGACGTGAACCACGCCGTCTTGGCAGTCGGCTATGGTGTGGAGAACGGCGTCCCGTATT
GGCTCATCAAGAACTCGTGGGGCGCCGACTGGGGTGACAATGGTTACTTCAAGATGGAAA
TGGGCAAGAACATGTGCGCTATTGCTACCTGCGCCTCCTACCCTGTCGTGGCGGCATGAA
GAAGCGCCAAATCGGCGAGTACAGTCTCGATTCGCCAGACATGAATAAGGTGTTTTCAGC
CCGAACAAGAACCTGAAGATTGGGGTATACAGGAACTGAAACTTTGCTGTGAATACAAAC
CACAAGGACTACGGTTGCAGTGAGCCCCGTGCGTGTACTCTTCCTCTGTATGGTTGTATG
GCTATATATGTAGGTGATCCAGCAATTTATTAGGGTTTCTCATGTATGTCTACGACATTT
TATTTCCGGGACAAATAAAATGGCCCATTCATAGTTCACAAAAAAAAAAAAAAACTGTCG
ATATCAGCAGGAAACTGGGCGCCACACATGCATCCTGCTGTATACTTAGGCCTCATTCCG
TTTACATGATTTCGAAATCAAAGAATAGAAAAAAGTAAAGGATTAGGATGCCCTAAAAAA
AAAAAAAAAAAA
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