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Barley1 22k Microarray Sequence ID: Barley1_00072 |
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Sequence Type
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Exemplar sequence
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Probe Set Details
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Probe Sequences & Alignment
- Probe sets for Barley1_00072:
Expression details for Contig72_s_at
GENE EXPRESSION VARIATION IN EXPERIMENTS for Contig72_s_at
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Alignments and Assemblies
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• Barley1 GeneChip Assembly
• Barley1 GeneChip Assembly 25 contig and alignment
• PlantGDB PUT assemblies
• GrainGenes Blast
• HarvEST: Barley 21 Assembly
• HarvEST: Barley 25 Assembly
• HarvEST BLAST
• PLEXdb Blast
• TAIR Blast
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Model Genome Alignments
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• Rice Alignment at Gramene (by locus name): LOC_Os06g01630.3, 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed, Expect:2e-33, match=56/62. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• Brachypodium distachyon Alignment at Brachybase: Bradi1g52260.4, , Expect:2e-33, match=56/62. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
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| Probe Set Annotation
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Affymetrix annotation, 2009-03-11
BEST BLASTX NR: 10/31/02 BAA90623.1 5e-33 (AP001129) ESTs AU033004(S0924),C74754(E50863) correspond to a region of the predicted gene.~Similar to Rat mRNA for
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Annotation via Blast
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• BLASTX UniProt: UniRef90_Q8RWN9, Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial n=2 Tax=Arabidopsis RepID=OPD22_ARATH, Expect:1e-24, match=47/63. Blast executed on 2012-01-23 against Uniref90 (Release: 2011_12, 14-Dec-2011) show top hits
• BLASTN TIGR Plant Transcript Assemblies: TA29844_4513, Hypothetical protein P0492E07.128 [Oryza sativa (japonica cultivar-group)], Expect:0, match=555/556. Blast executed on 2007-10-23 against TIGR TA Hordeum vulgare release 2 show top hits
• BLASTX NCBI Reference Sequence: NP_001056555, Os06g0105400 [Oryza sativa Japonica Group], Expect:1e-32, match=56/62. Blast executed on 2010-12-10 against NCBI RefSeq rel-44 show top hits
• BLASTX MSU Rice genome: LOC_Os06g01630.3, 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed, Expect:2e-33, match=56/62. Blast executed on 2009-08-30 against Rice genome, TIGR release 6.1 show top hits
• BLASTN DFCI Hordeum vulgare Gene Index: TC201887, homologue to UniRef100_Q9SWR9 Cluster: Dihydrolipoamide S-acetyltransferase; n=1; Zea mays|Rep: Dihydrolipoamide S-acetyltransferase - Zea mays (Maize), partial (33%), Expect:0, match=883/546. Blast executed on 2010-11-03 against HvGI(DFCI) release 11 show top hits
• BLASTX Brachypodium distachyon genome: Bradi1g52260.4, , Expect:2e-33, match=56/62. Blast executed on 2010-11-03 against Brachypodium distachyon genome, Brachybase release 1 show top hits
• BLASTX Arabidopsis thaliana genome: AT3G13930.1, | Symbols: | Dihydrolipoamide acetyltransferase, long form protein | chr3:4596240-4600143 FORWARD LENGTH=540, Expect:3e-26, match=47/63. Blast executed on 2010-12-10 against Arabidopsis thaliana genome, TAIR release 10 show top hits
Barley1 exemplars are kindly provided by Dr. Timothy Close from HarvEST:Barley. The BLASTs in this section are based on contig assembly #25.
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Additional Annotations
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No additional annotations found for this probe set.
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Sequence
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Total length: 573
>Barley1_00072
GGGAGGCCCTTTCGGAATCAAGCAATTCTGTGCCATCGTAAACCCTCCCCCAATCGGCAA
TCTTGGCTATTGGCTCTGCTGAGAAGAGGGTGGTCCCTGGAGTTGAGGGCCAATTTGAAG
TTGGGTCCTTCATGTCAGCCACGCTAAGCTGCGACCACCGGGTCATTGATGGCGCCATGG
GTGCGGAATGGCTCAAGGCATTCAAGAGCTACCTTGAGAACCCGACGACCATGCTGCTGT
AGGAGTTTCTTTTTTTCTGCTGTAAATGATGATGATGAGAGCAGTTTTTCTGTGTAGGCT
CTCATAAATAAAGACCACAATAACCACACCTCATTTTTGGCAATGAGGGCTTGGGAACCA
AGAGCAAACAAACAGATCATAGTCGGCACACGATGTTTAACCTATTTATCGGCAAATGGC
CGATACACCTTTTCCCCCTGCATTACCTGACCGGTGGAAATTTGTCGCCTACTTTTGCGC
TGTGTTTTACTGAATCCGATTCAAAGAATATTGTGTATCGGTTTGTTGCAAGGTGCTAAT
GAATTCCTGGATTTATAAAAAAAAAAAAAAAAA
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